Publications

Publications

Single-Cell Profiling Reveals Altered Endometrial Cellular Features Across the Menstrual Cycle in Endometriosis Patients
Authors: Almonte-Loya Ana, Wang Wanxin, Houshdaran Sahar, Tang Xinyu, Flynn Emily, Liu Binya, Kushnoor Divyashree, Nezhat Camran, Vilella Felipe, Simon Carlos, Vo Kim Chi, Casillas Amber, Khan Umair, Peredas Carlota, Oskotsky Tomiko T., Huang David, Vallvé-Juanico Júlia, Irwin Juan, Combes Alexis, Sirota Mar... See more
July 2025
Baseline predictors for 28-day COVID-19 severity and mortality among hospitalized patients: results from the IMPACC study
Authors: Hou Jintong, Haslund-Gourley Benjamin, Diray-Arce Joann, Hoch Annmarie, Rouphael Nadine, Becker Patrice M., Augustine Alison D., Ozonoff Al, Guan Leying, Kleinstein Steven H., Peters Bjoern, Reed Elaine, Altman Matt, Langelier Charles R., Maecker Holden, Kim Seunghee, Montgomery Ruth R., Krammer Flo... See more
Journal:
Frontiers in Medicine
July 2025
MICBG406A polymorphism reduces risk of mechanical ventilation and death during viral acute lung injury
Authors: Pickering Harry, Alipanah-Lechner Narges, Chen Ernie, Duchen Dylan, Maecker Holden T., Kim-Schulze Seunghee, Montgomery Ruth R., Cotsapas Chris, Steen Hanno, Krammer Florian, Langelier Charles R., Levy Ofer, Baden Lindsey R., Melamed Esther, Ehrlich Lauren I.R., McComsey Grace A., Sekaly Rafick P., ... See more
Journal:
JCI Insight
July 2025
Empiric Azithromycin in COVID-19 Impacts the Respiratory Microbiome and Antimicrobial Resistome without Anti-inflammatory Benefit
Authors: Langelier Charles, Glascock Abigail, Maguire Cole, Phan Hoang Van, Lydon Emily, Calfee Carolyn, Network IMPACC, Corry David, Kheradmand Farrah, Baden Lindsey, Sekaly Rafick-Pierre, McComsey Grace, Haddad Elias, Cairns Charles, Pulendran Bali, Fernandez-Sesma Ana, Simon Viviana, Metcalf Jordan, Higui... See more
June 2025
Decoding functional hematopoietic progenitor cells in the adult human lung
Authors: Conrad Catharina, Magnen Melia, Tsui Jessica, Wismer Harrison Jacob, Naser Mohammad, Venkataramani Urmila, Samad Bushra, Cleary Simon J, Qiu Longhui, Tian Jennifer J, De Giovanni Marco, Mende Nicole, Leavitt Andrew D, Passegue Emmanuelle, Laurenti Elisa, Combes Alexis J, Looney Mark R.
Journal:
Blood
February 2025
Peripheral blood mononuclear cell transcriptomic trajectories reveal dynamic regulation of inflammatory actors in delirium
Authors: LaHue Sara C., Takegami Naoki, Simmasalam Rubinee, Baqai Abiya, Munoz Elena, Sikri Anya, de Courson Thibault du Buisson, Singhal Nilika S., Eckalbar Walter, Langelier Charles R., Hendrickson Carolyn M., Calfee Carolyn S., Erle David J., Krummel Matthew F., Woodruff Prescott G., Oskotsky Tomiko, Siro... See more
February 2025
Identification of a multi-omics factor predictive of long COVID in the IMPACC study
Authors: Gabernet Gisela, Maciuch Jessica, Gygi Jeremy P., Moore John F., Hoch Annmarie, Syphurs Caitlin, Chu Tianyi, Jayavelu Naresh Doni, Corry David B., Kheradmand Farrah, Baden Lindsey R., Sekaly Rafick-Pierre, McComsey Grace A., Haddad Elias K., Cairns Charles B., Rouphael Nadine, Fernandez-Sesma Ana, S... See more
February 2025
Epigenetic attenuation of interferon signaling drives aging-related improvements in systemic lupus
Authors: Narendra Rithwik, Phan Hoang Van, Patterson Sarah L., Almonte Loya Ana Laura, Lanata Cristina, Love Christina, Park Joonsuk, Lydon Emily C., Shimoda Michiko Ametani, Barcellos Lisa, Mekonen Honey, Detweiler Angela, Deosthale Padmini, Neff Norma, Criswell Lindsey A., Maliskova Lenka, Eckalbar Walter,... See more
January 2025
Host-microbe multiomic profiling identifies distinct COVID-19 immune dysregulation in solid organ transplant recipients
Authors: Pickering Harry, Schaenman Joanna, Phan Hoang Van, Maguire Cole, Tsitsiklis Alexandra, Rouphael Nadine, Higuita Nelson Iván Agudelo, Atkinson Mark A., Brakenridge Scott, Fung Monica, Messer William, Reed Elaine F., Rivera Adreanne M., Pickering Harry, Sen Subha, Elashoff David, Ward Dawn C., Brook J... See more
Journal:
Nature Communications
January 2025
Coordinated variation in the immune systems and microbiomes of healthy humans is linked to tonic interferon states
Authors: Babdor Joel, Patel Ravi K, Davidson Brittany, Noecker Cecilia, Rahim Maha, Bisanz Jordan E, Tenvooren Iliana, Marquez Diana, Calvo Maria, Johri Vrinda, McCarthy Elizabeth, Shaheed Avneet, Ekstrand Christina, Weakley Allison M, Yu Feiqiao B, Fiehn Oliver, Turnbaugh Peter J, Combes Alexis J, Fragiadak... See more
December 2024
Unraveling SARS-CoV-2 Host-Response Heterogeneity through Longitudinal Molecular Subtyping
Authors: Wang Kexin, Nie Yutong, Maguire Cole, Syphurs Caitlin, Sheen Heejune, Karoly Meagan, Lapp Linda, Gygi Jeremy P., Jayavelu Naresh Doni, Patel Ravi K., Hoch Annmarie, Corry David, Kheradmand Farrah, McComsey Grace A., Fernandez-Sesma Ana, Simon Viviana, Metcalf Jordan P., Higuita Nelson I Agudelo, Mes... See more
November 2024