Publications | UCSF CoLabs

Holistic Characterization of Tumor Monocyte-to-Macrophage Differentiation Integrates Distinct Immune Phenotypes in Kidney Cancer

Authors: Mujal Adriana M, Combes Alexis J, Rao Arjun A, Binnewies Mikhail, Samad Bushra, Tsui Jessica, Boissonnas Alexandre, Pollack Joshua L,  Argüello Rafael J, Meng Maxwell V, Porten Sima P, Ruhland Megan K, Barry Kevin C, Chan Vincent, Krummel Matthew F. 

Journal:

Cancer Immunology Research

April 2022

Obesity alters pathology and treatment response in inflammatory disease

Authors: Bapat Sagar P., Whitty Caroline, Mowery Cody T., Liang Yuqiong, Yoo Arum, Jiang Zewen, Peters Michael C., Zhang Ling-juan, Vogel Ian, Zhou Carmen, Nguyen Vinh Q., Li Zhongmei, Chang Christina, Zhu Wandi S., Hastie Annette T., He Helen, Ren Xin, Qiu Wenli, Gayer Sarah G., Liu Chang, Choi Eun Jung, Fa... See more

Journal:

Nature

March 2022

Variation of Immune Cell Responses in Humans Reveals Sex-Specific Coordinated Signaling Across Cell Types

Authors: Fragiadakis GK, Bjornson-Hooper ZB, Madhireddy D, Sachs K, Chen H, McIlwain DR, Spitzer MH, Bendall SC and Nolan GP

Journal:

Frontiers in Immunology

March 2022

A Comprehensive Atlas of Immunological Differences Between Humans, Mice, and Non-Human Primates

Authors: Bjornson-Hooper Zachary B., Fragiadakis Gabriela K., Spitzer Matthew H., Chen Han, Madhireddy Deepthi, Hu Kevin, Lundsten Kelly, McIlwain David R., Nolan Garry P.

Journal:

Frontiers in Immunology

March 2022

Bile Acid–Sensitive Tuft Cells Regulate Biliary Neutrophil Influx

Authors: O’Leary Claire E., Sbierski-Kind Julia, Kotas Maya E., Wagner Johanna C., Liang Hong-Erh, Schroeder Andrew W., de Tenorio Jeshua C., von Moltke Jakob, Ricardo-Gonzalez Roberto R., Eckalbar Walter L., Molofsky Ari B., Schneider Christoph, Locksley Richard M.

Journal:

Science Immunology

March 2022

CRISPR activation and interference screens decode stimulation responses in primary human T cells

Authors: Schmidt Ralf, Steinhart Zachary, Layeghi Madeline, Freimer Jacob W., Bueno Raymund, Nguyen Vinh Q., Blaeschke Franziska, Ye Chun Jimmie, Marson Alexander

Journal:

Science

February 2022

Discovering dominant tumor immune archetypes in a pan-cancer census

Authors: Combes Alexis J., Samad Bushra, Tsui Jessica, Chew Nayvin W., Yan Peter, Reeder Gabriella C., Kushnoor Divyashree, Shen Alan, Davidson Brittany, Barczak Andrea J., Adkisson Michael, Edwards Austin, Naser Mohammad, Barry Kevin C., Courau Tristan, Hammoudi Taymour, Argüello Rafael J., Rao Arjun Arkal,... See more

Journal:

Cell

January 2022

IL-6 and TNFα Drive Extensive Proliferation of Human Tregs Without Compromising Their Lineage Stability or Function

Authors: Skartsis Nikolaos, Peng Yani, Ferreira Leonardo M. R., Nguyen Vinh, Ronin Emilie, Muller Yannick D., Vincenti Flavio, Tang Qizhi

Journal:

Frontiers in Immunology

December 2021

The intersection of COVID-19 and autoimmunity

Authors: Knight Jason S., Caricchio Roberto, Casanova Jean-Laurent, Combes Alexis J., Diamond Betty, Fox Sharon E., Hanauer David A., James Judith A., Kanthi Yogendra, Ladd Virginia, Mehta Puja, Ring Aaron M., Sanz Ignacio, Selmi Carlo, Tracy Russell P., Utz Paul J., Wagner Catriona A., Wang Julia Y., McCune... See more

Journal:

Journal of Clinical Investigation

December 2021

Genetic and Immunologic Features of Recurrent Stage I Lung Adenocarcinoma

Authors: Kratz Johannes R., Li Jack Z., Tsui Jessica, Lee Jen C., Ding Vivianne W., Rao Arjun A., Mann Michael J., Chan Vincent, Combes Alexis J., Krummel Matthew F., Jablons David M.

Journal:

Scientific Reports

December 2021

Polyclonal Regulatory T Cell Manufacturing Under cGMP: A Decade of Experience

Authors: Balcerek Joanna, Shy Brian R., Putnam Amy L., Masiello Lisa M., Lares Angela, Dekovic Florinna, Acevedo Luis, Lee Michael R., Nguyen Vinh, Liu Weihong, Paruthiyil Sreenivasan, Xu Jingying, Leinbach Ashley S., Bluestone Jeffrey A., Tang Qizhi, Esensten Jonathan H.

Journal:

Frontiers in Immunology

November 2021

Molecular Programs of Fibrotic Change in Aging Human Lung

Authors: Lee Seoyeon, Islam Mohammad Naimul, Boostanpour Kaveh, Aran Dvir, Jin Guangchun, Christenson Stephanie, Matthay Michael A., Eckalbar Walter L., DePianto Daryle J., Arron Joseph R., Magee Liam, Bhattacharya Sunita, Matsumoto Rei, Kubota Masaru, Farber Donna L., Bhattacharya Jahar, Wolters Paul J., Bh... See more

Journal:

Nature Communications

November 2021

Sex-Stratified Single-Cell RNA-Seq Analysis Identifies Sex-Specific and Cell Type-Specific Transcriptional Responses in Alzheimer’s Disease Across Two Brain Regions

Authors: Belonwu Stella A., Li Yaqiao, Bunis Daniel, Rao Arjun Arkal, Solsberg Caroline Warly, Tang Alice, Fragiadakis Gabriela K., Dubal Dena B., Oskotsky Tomiko, Sirota Marina

Journal:

Molecular Neurobiology

October 2021

Inhibitor Combinations Reveal Wiring of the Proteostasis Network in Prostate Cancer Cells

Authors: Shkedi Arielle, Adkisson Michael, Schroeder Andrew, Eckalbar Walter L, Kuo Szu-Yu, Neckers Leonard, Gestwicki Jason E.

Journal:

Journal of Medicinal Chemistry

October 2021

Type I Interferon Autoantibodies are Associated with Systemic Immune Alterations in Patients with COVID-19

Authors: Van der Wijst Monique G. P., Vazquez Sara E., Hartoularos George C., Bastard Paul, Grant Tianna, Bueno Raymund, Lee David S., Greenland John R., Sun Yang, Perez Richard, Ogorodnikov Anton, Ward Alyssa, Mann Sabrina A., Lynch Kara L., Yun Cassandra, Havlir Diane V., Chamie Gabriel, Marquez Carina, Gr... See more

Journal:

Science Translational Medicine

September 2021

The Effect of Low-Dose IL-2 and Treg Adoptive Cell Therapy in Patients with Type 1 diabetes

Authors: Dong Shen, Hiam-Galvez Kamir J., Mowery Cody T., Herold Kevan C., Gitelman Stephen E., Esensten Jonathan H., Liu Weihong, Lares Angela P., Leinbach Ashley S., Lee Michael, Nguyen Vinh, Tamaki Stanley J., Tamaki Whitney, Tamaki Courtney M., Mehdizadeh Morvarid, Putnam Amy L., Spitzer Matthew H., Ye C... See more

Journal:

JCI Insight

September 2021

Precision Engineering of an Anti-HLA-A2 Chimeric Antigen Receptor in Regulatory T Cells for Transplant Immune Tolerance

Authors: Muller Yannick D., Ferreira Leonardo M. R., Ronin Emilie, Ho Patrick, Nguyen Vinh, Faleo Gaetano, Zhou Yu, Lee Karim, Leung Kevin K., Skartsis Nikolaos, Kaul Anupurna M., Mulder Arend, Claas Frans H. J., Wells James A., Bluestone Jeffrey A., Tang Qizhi

Journal:

Frontiers in Immunology

September 2021

Active surveillance characterizes human intratumoral T cell exhaustion

Authors: You Ran, Artichoker Jordan, Fries Adam, Edwards Austin W., Combes Alexis J., Reeder Gabriella C., Samad Bushra, Krummel Matthew F.

Journal:

Journal of Clinical Investigation

September 2021

Increased Risk of Severe Clinical Course of COVID-19 in Carriers of HLA-C*04:01

Authors: Weiner January, Suwalski Phillip, Holtgrewe Manuel, Rakitko Alexander, Thibeault Charlotte, Müller Melina, Patriki Dimitri, Quedenau Claudia, Krüger Ulrike, Ilinsky Valery, Popov Iaroslav, Balnis Joseph, Jaitovich Ariel, Helbig Elisa T, Lippert Lena J, Stubbemann Paula, Real Luis M, Macías Juan, Pin... See more

Journal:

EClinicalMedicine

September 2021

Inhibition of MET Signaling with Ficlatuzumab in Combination with Chemotherapy in Refractory AML: Clinical Outcomes and High-Dimensional Analysis

Authors: Wang Victoria E, Blaser Bradley W, Patel Ravi K, Behbehani Gregory K, Rao Arjun A, Durbin-Johnson Blythe, Jiang Tommy, Logan Aaron C, Settles Matthew, Mannis Gabriel N, Olin Rebecca, Damon Lloyd E, Martin Thomas G, Sayre Peter H, Gaensler Karin M, McMahon Emma, Flanders Michael, Weinberg Vivian, Ye ... See more

Journal:

Blood Cancer Discovery

September 2021