Genomics CoLabs

Genomics CoLab

The Genomics CoLab specializes in the development and adoption of cutting-edge genomic approaches for collaborative and service-based research projects. These approaches include bulk- and single-cell RNA-seq, single cell multiomic approaches, small RNA-Seq, ChIP/ATAC-seq and whole exome/genome sequencing. We are also actively working on integrating novel genomic methods, such as combinatorial genomic methods, spatial transcriptomics, and new epigenomic approaches and on improving existing methods, such as increasing throughput and decreasing costs of bulk RNA-seq methods.

Genomics Home
Getting Started
Walter Eckalbar, PhD

Walter Eckalbar, PhD

Genomics Director
Walter Eckalbar, PhD

Walter Eckalbar, PhD

Genomics Director

Recent Genomics Publications

Peripheral blood mononuclear cell transcriptomic trajectories reveal dynamic regulation of inflammatory actors in delirium
Authors: LaHue Sara C., Takegami Naoki, Simmasalam Rubinee, Baqai Abiya, Munoz Elena, Sikri Anya, de Courson Thibault du Buisson, Singhal Nilika S., Eckalbar Walter, Langelier Charles R., Hendrickson Carolyn M., Calfee Carolyn S., Erle David J., Krummel Matthew F., Woodruff Prescott G., Oskotsky Tomiko, Sirota Marina, Ferguson Adam, Douglas Vanja C., Newman John C., Pleasure Samuel J., Wilson Michael R., Singhal Neel S.
February 2025
Identification of a multi-omics factor predictive of long COVID in the IMPACC study
Authors: Gabernet Gisela, Maciuch Jessica, Gygi Jeremy P., Moore John F., Hoch Annmarie, Syphurs Caitlin, Chu Tianyi, Jayavelu Naresh Doni, Corry David B., Kheradmand Farrah, Baden Lindsey R., Sekaly Rafick-Pierre, McComsey Grace A., Haddad Elias K., Cairns Charles B., Rouphael Nadine, Fernandez-Sesma Ana, Simon Viviana, Metcalf Jordan P., Agudelo Higuita Nelson I, Hough Catherine L., Messer William B., Davis Mark M., Nadeau Kari C., Pulendran Bali, Kraft Monica, Bime Chris, Reed Elaine F., Schaenman Joanna, Erle David J., Calfee Carolyn S., Atkinson Mark A., Brackenridge Scott C., Melamed Esther, Shaw Albert C., Hafler David A., Ozonoff Al, Bosinger Steven E., Eckalbar Walter, Maecker Holden T., Kim-Schulze Seunghee, Steen Hanno, Krammer Florian, Westendorf Kerstin, Network IMPACC, Peters Bjoern, Fourati Slim, Altman Matthew C., Levy Ofer, Smolen Kinga K., Montgomery Ruth R., Diray-Arce Joann, Kleinstein Steven H., Guan Leying, Ehrlich Lauren I. R.
February 2025
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Learn about CoProjects, Incubators, and Plug-in Labs

CoProjects are a series of shared projects designed to integrate our community through common pipelines and data curation. CoLabs CoProjects aim to build immune profiles for untapped streams of human diseases at UCSF.
See our CoProjects
Incubator & Plug-in Labs