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Data Science CoLab

The Data Science CoLab is a collaboration-based research lab with a focus on systems immunology and computational methods development. Our research centers on understanding patient immune state using single-cell methods, primarily CyTOF and single-cell sequencing, in a variety of contexts including infection, cancer, and at steady-state. We also study the interactions between the immune system and the microbiome at the systems level. We facilitate close collaborations between experimental and computational biologists and provide tools and training for biologists who want to better engage with their data.

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Gabriela Fragiadakis, PhD

Gabriela Fragiadakis, PhD

DS Director
Gabriela Fragiadakis, PhD

Gabriela Fragiadakis, PhD

DS Director

Recent DS Publications

Microbial dynamics and pulmonary immune responses in COVID-19 secondary bacterial pneumonia
Authors: Spottiswoode Natasha, Tsitsiklis Alexandra, Chu Victoria T., Phan Hoang Van, DeVoe Catherine, Love Christina, Ghale Rajani, Bloomstein Joshua, Zha Beth Shoshana, Maguire Cole P., Glascock Abigail, Sarma Aartik, Mourani Peter M., Kalantar Katrina L., Detweiler Angela, Neff Norma, Haller Sidney C., Caldera Saharai, Doernberg Sarah B., Mick Eran, Van Phan Hoang, Serpa Paula Hayakawa, Lee Deanna, Phelps Maira, Calfee Carolyn S., Chak Suzanna, Christenson Stephanie, Eckalbar Walter L., Erle David J., Jauregui Alejandra, Jones Chayse, Leroux Carolyn, Matthay Michael, Neyton Lucile P. A., Nguyen Viet, Sigman Austin, Willmore Andrew, Woodruff Prescott G., Adkisson Michael, Asthana Saurabh, Collins Zachary, Fragiadakis Gabriela K., Maliskova Lenka, Patel Ravi, Rao Arjun, Samad Bushra, Schroeder Andrew, Shaw Cole, Kangelaris Kirsten N., Kushnoor Divya, Lea Tasha, Hu Kenneth, Shen Alan, Tsui Jessica, Bueno Raymund, Lee David, Sun Yang, Tumurbaatar Erden, Ward Alyssa, van der Wijst Monique, Ye Jimmie, Ansel K. Mark, Chan Vincent, Hiam Kamir, McCarthy Elizabeth, Muñoz-Sandoval Priscila, Ogorodnikov Anton, Spitzer Matthew, Zhu Wandi S., Gordon Gracie, Hartoularos George, Rashid Sadeed, Rodriguez Nicklaus, Tang Kevin, Altamirano Luz Torres, Whatley Alexander, Song Yun S., Leligdowicz Aleksandra, Wilson Michael, Chew Nayvin, Combes Alexis, Courau Tristan, Jones Norman, Milush Jeff, Kumar Nitasha, Huang Billy, Mahboob Salman, Parada Randy, Reeder Gabriella, DeRisi Joseph L., Erle David J., Hendrickson Carolyn M., Kangelaris Kirsten N., Krummel Matthew F., Matthay Michael A., Woodruff Prescott G., Calfee Carolyn S., Langelier Charles R.
October 2024
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Learn about CoProjects, Incubators, and Plug-in Labs

CoProjects are a series of shared projects designed to integrate our community through common pipelines and data curation. CoLabs CoProjects aim to build immune profiles for untapped streams of human diseases at UCSF.
See our CoProjects
Incubator & Plug-in Labs