Genomics CoLabs

Genomics CoLab

The Genomics CoLab specializes in the development and adoption of cutting-edge genomic approaches for collaborative and service-based research projects. These approaches include bulk- and single-cell RNA-seq, single cell multiomic approaches, small RNA-Seq, ChIP/ATAC-seq and whole exome/genome sequencing. We are also actively working on integrating novel genomic methods, such as combinatorial genomic methods, spatial transcriptomics, and new epigenomic approaches and on improving existing methods, such as increasing throughput and decreasing costs of bulk RNA-seq methods.

Recent Genomics Publications

Authors: Wang Kexin, Nie Yutong, Maguire Cole, Syphurs Caitlin, Sheen Heejune, Karoly Meagan, Lapp Linda, Gygi Jeremy P., Jayavelu Naresh Doni, Patel Ravi K., Hoch Annmarie, Corry David, Kheradmand Farrah, McComsey Grace A., Fernandez-Sesma Ana, Simon Viviana, Metcalf Jordan P., Higuita Nelson I Agudelo, Messer William B., Davis Mark M., Nadeau Kari C., Kraft Monica, Bime Chris, Schaenman Joanna, Erle David, Calfee Carolyn S., Atkinson Mark A., Brackenridge Scott C., Hafler David A., Shaw Albert, Rahman Adeeb, Hough Catherine L., Geng Linda N., Ozonoff Al, Haddad Elias K., Reed Elaine F., van Bakel Harm, Kim-Schultz Seunghee, Krammer Florian, Wilson Michael, Eckalbar Walter, Bosinger Steven, Langelier Charles R., Sekaly Rafick P., Montgomery Ruth R., Maecker Holden T., Krumholz Harlan, Melamed Esther, Steen Hanno, Pulendran Bali, Augustine Alison D., Cairns Charles B., Rouphael Nadine, Becker Patrice M., Fourati Slim, Shannon Casey P., Smolen Kinga K., Peters Bjoern, Kleinstein Steven H., Levy Ofer, Altman Matthew C., Iwasaki Akiko, Diray-Arce Joann, Ehrlich Lauren I. R., Guan Leying
November 2024
Authors: Maguire Cole, Chen Jing, Rouphael Nadine, Pickering Harry, Phan Hoang Van, Glascock Abigail, Chu Victoria, Dandekar Ravi, Corry David, Kheradmand Farrah, Baden Lindsey R., Selaky Rafick, McComsey Grace A., Haddad Elias K., Cairns Charles B., Pulendran Bali, Sesma Ana Fernandez-, Simon Viviana, Metcalf Jordan P., Agudelo Higuita Nelson I, Messer William B., David Mark M., Nadeau Kari C., Kraft Monica, Bime Chris, Schaenman Joanna, Erle David, Calfee Carolyn S., Atkinson Mark A., Brackenridge Scott C., Ehrlich Lauren I. R., Montgomery Ruth R., Shaw Albert C., Hough Catherine L., Geng Linda N, Hafler David A., Augustine Alison D., Becker Patrice M., Peters Bjoern, Ozonoff Al, Kim-Schulze Seunghee Hee, Krammer Florian, Bosinger Steve, Eckalbar Walter, Altman Matthew C., Wilson Michael, Guan Leying, Kleinstein Steven H., Smolen Kinga K., Reed Elaine F., Levy Ofer, Maecker Holden, Hunt Peter, Steen Hanno, Diray-Arce Joann, Langelier Charles R., Melamed Esther
November 2024
Authors: Spottiswoode Natasha, Tsitsiklis Alexandra, Chu Victoria T., Phan Hoang Van, DeVoe Catherine, Love Christina, Ghale Rajani, Bloomstein Joshua, Zha Beth Shoshana, Maguire Cole P., Glascock Abigail, Sarma Aartik, Mourani Peter M., Kalantar Katrina L., Detweiler Angela, Neff Norma, Haller Sidney C., Caldera Saharai, Doernberg Sarah B., Mick Eran, Van Phan Hoang, Serpa Paula Hayakawa, Lee Deanna, Phelps Maira, Calfee Carolyn S., Chak Suzanna, Christenson Stephanie, Eckalbar Walter L., Erle David J., Jauregui Alejandra, Jones Chayse, Leroux Carolyn, Matthay Michael, Neyton Lucile P. A., Nguyen Viet, Sigman Austin, Willmore Andrew, Woodruff Prescott G., Adkisson Michael, Asthana Saurabh, Collins Zachary, Fragiadakis Gabriela K., Maliskova Lenka, Patel Ravi, Rao Arjun, Samad Bushra, Schroeder Andrew, Shaw Cole, Kangelaris Kirsten N., Kushnoor Divya, Lea Tasha, Hu Kenneth, Shen Alan, Tsui Jessica, Bueno Raymund, Lee David, Sun Yang, Tumurbaatar Erden, Ward Alyssa, van der Wijst Monique, Ye Jimmie, Ansel K. Mark, Chan Vincent, Hiam Kamir, McCarthy Elizabeth, Muñoz-Sandoval Priscila, Ogorodnikov Anton, Spitzer Matthew, Zhu Wandi S., Gordon Gracie, Hartoularos George, Rashid Sadeed, Rodriguez Nicklaus, Tang Kevin, Altamirano Luz Torres, Whatley Alexander, Song Yun S., Leligdowicz Aleksandra, Wilson Michael, Chew Nayvin, Combes Alexis, Courau Tristan, Jones Norman, Milush Jeff, Kumar Nitasha, Huang Billy, Mahboob Salman, Parada Randy, Reeder Gabriella, DeRisi Joseph L., Erle David J., Hendrickson Carolyn M., Kangelaris Kirsten N., Krummel Matthew F., Matthay Michael A., Woodruff Prescott G., Calfee Carolyn S., Langelier Charles R.
October 2024

Learn about CoProjects, Incubators, and Plug-in Labs

CoProjects are a series of shared projects designed to integrate our community through common pipelines and data curation. CoLabs CoProjects aim to build immune profiles for untapped streams of human diseases at UCSF.