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Data Science CoLab

The Data Science CoLab is a collaboration-based research lab with a focus on systems immunology and computational methods development. Our research centers on understanding patient immune state using single-cell methods, primarily CyTOF and single-cell sequencing, in a variety of contexts including infection, cancer, and at steady-state. We also study the interactions between the immune system and the microbiome at the systems level. We facilitate close collaborations between experimental and computational biologists and provide tools and training for biologists who want to better engage with their data.

Recent DS Publications

Authors: Babdor Joel, Patel Ravi K., Davidson Brittany, Koser Kelvin, Noecker Cecilia, Rahim Maha K., Bisanz Jordan E., Tenvooren Iliana, Marquez Diana, Calvo Maria, Johri Vrinda, McCarthy Elizabeth E., Shaheed Avneet, Ekstrand Christina, Weakley Allison M., Yu Feiqiao B., Krip Kristen, Shaikh Kashif A., Ama... See more
Journal:
Cell
March 2026
Authors: Dhariwala Miqdad O., Carale Ricardo O., DeRogatis Andrea M., Rodriguez-Valbuena Henry, Okoro Joy N., Ekstrand Christina A., Weckel Antonin, Tran Victoria M., Habrylo Irek, Barrere-Cain Rio, Ojewumi Oluwasunmisola T., Tammen Allison E., Tsui Jessica, Shaikh Saba, Yellamilli Shivaram, Aladhami Ahmed K... See more
Journal:
Immunity
February 2026

Learn about CoProjects, Incubators, and Plug-in Labs

CoProjects are a series of shared projects designed to integrate our community through common pipelines and data curation. CoLabs CoProjects aim to build immune profiles for untapped streams of human diseases at UCSF.