Publications | UCSF CoLabs

Inhibitor Combinations Reveal Wiring of the Proteostasis Network in Prostate Cancer Cells

Authors: Shkedi Arielle, Adkisson Michael, Schroeder Andrew, Eckalbar Walter L, Kuo Szu-Yu, Neckers Leonard, Gestwicki Jason E.

Journal:

Journal of Medicinal Chemistry

October 2021

Type I Interferon Autoantibodies are Associated with Systemic Immune Alterations in Patients with COVID-19

Authors: Van der Wijst Monique G. P., Vazquez Sara E., Hartoularos George C., Bastard Paul, Grant Tianna, Bueno Raymund, Lee David S., Greenland John R., Sun Yang, Perez Richard, Ogorodnikov Anton, Ward Alyssa, Mann Sabrina A., Lynch Kara L., Yun Cassandra, Havlir Diane V., Chamie Gabriel, Marquez Carina, Gr... See more

Journal:

Science Translational Medicine

September 2021

The Effect of Low-Dose IL-2 and Treg Adoptive Cell Therapy in Patients with Type 1 diabetes

Authors: Dong Shen, Hiam-Galvez Kamir J., Mowery Cody T., Herold Kevan C., Gitelman Stephen E., Esensten Jonathan H., Liu Weihong, Lares Angela P., Leinbach Ashley S., Lee Michael, Nguyen Vinh, Tamaki Stanley J., Tamaki Whitney, Tamaki Courtney M., Mehdizadeh Morvarid, Putnam Amy L., Spitzer Matthew H., Ye C... See more

Journal:

JCI Insight

September 2021

Precision Engineering of an Anti-HLA-A2 Chimeric Antigen Receptor in Regulatory T Cells for Transplant Immune Tolerance

Authors: Muller Yannick D., Ferreira Leonardo M. R., Ronin Emilie, Ho Patrick, Nguyen Vinh, Faleo Gaetano, Zhou Yu, Lee Karim, Leung Kevin K., Skartsis Nikolaos, Kaul Anupurna M., Mulder Arend, Claas Frans H. J., Wells James A., Bluestone Jeffrey A., Tang Qizhi

Journal:

Frontiers in Immunology

September 2021

Active surveillance characterizes human intratumoral T cell exhaustion

Authors: You Ran, Artichoker Jordan, Fries Adam, Edwards Austin W., Combes Alexis J., Reeder Gabriella C., Samad Bushra, Krummel Matthew F.

Journal:

Journal of Clinical Investigation

September 2021

Increased Risk of Severe Clinical Course of COVID-19 in Carriers of HLA-C*04:01

Authors: Weiner January, Suwalski Phillip, Holtgrewe Manuel, Rakitko Alexander, Thibeault Charlotte, Müller Melina, Patriki Dimitri, Quedenau Claudia, Krüger Ulrike, Ilinsky Valery, Popov Iaroslav, Balnis Joseph, Jaitovich Ariel, Helbig Elisa T, Lippert Lena J, Stubbemann Paula, Real Luis M, Macías Juan, Pin... See more

Journal:

EClinicalMedicine

September 2021

Inhibition of MET Signaling with Ficlatuzumab in Combination with Chemotherapy in Refractory AML: Clinical Outcomes and High-Dimensional Analysis

Authors: Wang Victoria E, Blaser Bradley W, Patel Ravi K, Behbehani Gregory K, Rao Arjun A, Durbin-Johnson Blythe, Jiang Tommy, Logan Aaron C, Settles Matthew, Mannis Gabriel N, Olin Rebecca, Damon Lloyd E, Martin Thomas G, Sayre Peter H, Gaensler Karin M, McMahon Emma, Flanders Michael, Weinberg Vivian, Ye ... See more

Journal:

Blood Cancer Discovery

September 2021

CCR2 deficiency alters activation of microglia subsets in traumatic brain injury

Authors: Somebang Kerri, Rudolph Joshua, Imhof Isabella, Li Luyi, Niemi Erene C., Shigenaga Judy, Tran Huy, Gill T. Michael, Lo Iris, Zabel Brian A., Schmajuk Gabriela, Wipke Brian T., Gyoneva Stefka, Jandreski Luke, Craft Michael, Benedetto Gina, Plowey Edward D., Charo Israel, Campbell James, Ye Chun Jimmi... See more

Journal:

Cell Reports

September 2021

Immunophenotyping assessment in a COVID-19 cohort (IMPACC): A prospective longitudinal study

Authors: Rouphael Nadine, Maecker Holden, Montgomery Ruth R., Diray-Arce Joann, Kleinstein Steven H., Altman Matthew C., Bosinger Steven E., Eckalbar Walter, Guan Leying, Hough Catherine L., Krammer Florian, Langelier Charles, Levy Ofer, McEnaney Kerry, Peters Bjoern, Rahman Adeeb, Rajan Jayant V., Sigelman ... See more

Journal:

Science Immunology

August 2021

The WAVE complex associates with sites of saddle membrane curvature

Authors: Pipathsouk Anne, Brunetti Rachel M., Town Jason P., Graziano Brian R., Breuer Artù, Pellett Patrina A., Marchuk Kyle, Tran Ngoc-Han T., Krummel Matthew F., Stamou Dimitrios, Weiner Orion D.

Journal:

Journal of Cell Biology

August 2021

Gut-microbiota-targeted diets modulate human immune status

Journal:

Cell

August 2021

Cbl-b deficiency prevents functional but not phenotypic T cell anergy

Authors: Nguyen Trang T.T., Wang Zhi-En, Shen Lin, Schroeder Andrew, Eckalbar Walter, Weiss Arthur

Journal:

Journal of Experimental Medicine

July 2021

Single-Cell Transcriptome Analysis Defines Heterogeneity of the Murine Pancreatic Ductal Tree

Authors: Hendley Audrey M, Rao Arjun A, Leonhardt Laura, Ashe Sudipta, Smith Jennifer A, Giacometti Simone, Peng Xianlu L, Jiang Honglin, Berrios David I, Pawlak Mathias, Li Lucia Y, Lee Jonghyun, Collisson Eric A, Anderson Mark S, Fragiadakis Gabriela K, Yeh Jen Jen, Ye Chun Jimmie, Kim Grace E, Weaver Vale... See more

Journal:

eLife

May 2021

DNGR-1 Limits Flt3L-Mediated Antitumor Immunity by Restraining Tumor-Infiltrating Type I Conventional Dendritic Cells

Authors: Cueto Francisco J, del Fresno Carlos, Brandi Paola, Combes Alexis J., Hernández-García Elena, Sánchez-Paulete Alfonso R, Enamorado Michel, Bromley Christian P, Gomez Manuel J, Conde-Garrosa Ruth, Mañes Santos, Zelenay Santiago, Melero Ignacio, Iborra Salvador, Krummel Matthew F., Sancho David

Journal:

Journal for ImmunoTherapy of Cancer

May 2021

Gut-Microbiota-Targeted Diets Modulate Human Immune Status

Authors: Wastyk Hannah C., Fragiadakis Gabriela K., Perelman Dalia, Dahan Dylan, Merrill Bryan D., Yu Feiqiao B., Topf Madeline, Gonzalez Carlos G., Van Treuren William, Han Shuo, Robinson Jennifer L., Elias Joshua E., Sonnenburg Erica D., Gardner Christopher D., Sonnenburg Justin L.

Journal:

Cell

May 2021

Transcriptomic Analysis of Immune Cells in a Multi-Ethnic Cohort of Systemic Lupus Erythematosus Patients Identifies Ethnicity- and Disease-Specific Expression Signatures

Authors: Andreoletti Gaia, Lanata Cristina M., Trupin Laura, Paranjpe Ishan, Jain Tia S., Nititham Joanne, Taylor Kimberly E., Combes Alexis J., Maliskova Lenka, Ye Chun Jimmie, Katz Patricia, Dall’Era Maria, Yazdany Jinoos, Criswell Lindsey A., Sirota Marina

Journal:

Communications Biology

April 2021

A Tumor-Specific Mechanism of T Enrichment Mediated by the Integrin αvβ8

Authors: Seed Robert I., Kobayashi Kenji, Ito Saburo, Takasaka Naoki, Cormier Anthony, Jespersen Jillian M., Publicover Jean, Trilok Suprita, Combes Alexis J., Chew Nayvin W., Chapman Jocelyne, Krummel Matthew F., Lou Jianlong, Marks James, Cheng Yifan, Baron Jody L., Nishimura Stephen L.

Journal:

Science Immunology

March 2021

Flow-Cytometric Analysis and Purification of Airway Epithelial-Cell Subsets

Authors: Bonser Luke R., Koh Kyung Duk, Johansson Kristina, Choksi Semil P., Cheng Dan, Liu Leqian, Sun Dingyuan I., Zlock Lorna T., Eckalbar Walter L., Finkbeiner Walter E., Erle David J.

Journal:

American Journal of Respiratory Cell and Molecular Biology

March 2021

The SIRPα–CD47 immune checkpoint in NK cells

Authors: Deuse Tobias, Hu Xiaomeng, Agbor-Enoh Sean, Jang Moon K., Alawi Malik, Saygi Ceren, Gravina Alessia, Tediashvili Grigol, Nguyen Vinh Q., Liu Yuan, Valantine Hannah, Lanier Lewis L., Schrepfer Sonja

Journal:

Journal of Experimental Medicine

March 2021

A “Data Sharing Trust” Model for Rapid, Collaborative Science

Authors: Chan Vincent, Gherardini Pier Federico, Krummel Matthew F., Fragiadakis Gabriela K.

Journal:

Cell

February 2021