Publications

Publications

Peripheral blood mononuclear cell transcriptomic trajectories reveal dynamic regulation of inflammatory actors in delirium
Authors: LaHue Sara C., Takegami Naoki, Simmasalam Rubinee, Baqai Abiya, Munoz Elena, Sikri Anya, de Courson Thibault du Buisson, Singhal Nilika S., Eckalbar Walter, Langelier Charles R., Hendrickson Carolyn M., Calfee Carolyn S., Erle David J., Krummel Matthew F., Woodruff Prescott G., Oskotsky Tomiko, Siro... See more
February 2025
Identification of a multi-omics factor predictive of long COVID in the IMPACC study
Authors: Gabernet Gisela, Maciuch Jessica, Gygi Jeremy P., Moore John F., Hoch Annmarie, Syphurs Caitlin, Chu Tianyi, Jayavelu Naresh Doni, Corry David B., Kheradmand Farrah, Baden Lindsey R., Sekaly Rafick-Pierre, McComsey Grace A., Haddad Elias K., Cairns Charles B., Rouphael Nadine, Fernandez-Sesma Ana, S... See more
February 2025
Epigenetic attenuation of interferon signaling drives aging-related improvements in systemic lupus
Authors: Narendra Rithwik, Phan Hoang Van, Patterson Sarah L., Almonte Loya Ana Laura, Lanata Cristina, Love Christina, Park Joonsuk, Lydon Emily C., Shimoda Michiko Ametani, Barcellos Lisa, Mekonen Honey, Detweiler Angela, Deosthale Padmini, Neff Norma, Criswell Lindsey A., Maliskova Lenka, Eckalbar Walter,... See more
January 2025
Host-microbe multiomic profiling identifies distinct COVID-19 immune dysregulation in solid organ transplant recipients
Authors: Pickering Harry, Schaenman Joanna, Phan Hoang Van, Maguire Cole, Tsitsiklis Alexandra, Rouphael Nadine, Higuita Nelson Iván Agudelo, Atkinson Mark A., Brakenridge Scott, Fung Monica, Messer William, Reed Elaine F., Rivera Adreanne M., Pickering Harry, Sen Subha, Elashoff David, Ward Dawn C., Brook J... See more
Journal:
Nature Communications
January 2025
Coordinated variation in the immune systems and microbiomes of healthy humans is linked to tonic interferon states
Authors: Babdor Joel, Patel Ravi K, Davidson Brittany, Noecker Cecilia, Rahim Maha, Bisanz Jordan E, Tenvooren Iliana, Marquez Diana, Calvo Maria, Johri Vrinda, McCarthy Elizabeth, Shaheed Avneet, Ekstrand Christina, Weakley Allison M, Yu Feiqiao B, Fiehn Oliver, Turnbaugh Peter J, Combes Alexis J, Fragiadak... See more
December 2024
Unraveling SARS-CoV-2 Host-Response Heterogeneity through Longitudinal Molecular Subtyping
Authors: Wang Kexin, Nie Yutong, Maguire Cole, Syphurs Caitlin, Sheen Heejune, Karoly Meagan, Lapp Linda, Gygi Jeremy P., Jayavelu Naresh Doni, Patel Ravi K., Hoch Annmarie, Corry David, Kheradmand Farrah, McComsey Grace A., Fernandez-Sesma Ana, Simon Viviana, Metcalf Jordan P., Higuita Nelson I Agudelo, Mes... See more
November 2024
Chronic Viral Reactivation and Associated Host Immune Response and Clinical Outcomes in Acute COVID-19 and Post-Acute Sequelae of COVID-19
Authors: Maguire Cole, Chen Jing, Rouphael Nadine, Pickering Harry, Phan Hoang Van, Glascock Abigail, Chu Victoria, Dandekar Ravi, Corry David, Kheradmand Farrah, Baden Lindsey R., Selaky Rafick, McComsey Grace A., Haddad Elias K., Cairns Charles B., Pulendran Bali, Sesma Ana Fernandez-, Simon Viviana, Metca... See more
November 2024
Microbial dynamics and pulmonary immune responses in COVID-19 secondary bacterial pneumonia
Authors: Spottiswoode Natasha, Tsitsiklis Alexandra, Chu Victoria T., Phan Hoang Van, DeVoe Catherine, Love Christina, Ghale Rajani, Bloomstein Joshua, Zha Beth Shoshana, Maguire Cole P., Glascock Abigail, Sarma Aartik, Mourani Peter M., Kalantar Katrina L., Detweiler Angela, Neff Norma, Haller Sidney C., Ca... See more
Journal:
Nature Communications
October 2024
Chromatin remodelling drives immune cell–fibroblast communication in heart failure
Authors: Alexanian Michael, Padmanabhan Arun, Nishino Tomohiro, Travers Joshua G., Ye Lin, Pelonero Angelo, Lee Clara Youngna, Sadagopan Nandhini, Huang Yu, Auclair Kirsten, Zhu Ada, An Yuqian, Ekstrand Christina A., Martinez Cassandra, Teran Barbara Gonzalez, Flanigan Will R., Kim Charis Kee-Seon, Lumbao-Co... See more
Journal:
Nature
October 2024
Proinflammatory immune cells disrupt angiogenesis and promote germinal matrix hemorrhage in prenatal human brain
Authors: Chen Jiapei, Crouch Elizabeth E., Zawadzki Miriam E., Jacobs Kyle A., Mayo Lakyn N., Choi Jennifer Ja-Yoon, Lin Pin-Yeh, Shaikh Saba, Tsui Jessica, Gonzalez-Granero Susana, Waller Shamari, Kelekar Avani, Kang Gugene, Valenzuela Edward J., Birrueta Janeth Ochoa, Diafos Loukas N., Wedderburn-Pugh Kayl... See more
Journal:
Nature Neuroscience
September 2024
Single-cell RNA-seq analysis reveals cell subsets and gene signatures associated with Rheumatoid Arthritis Disease Activity
Authors: Binvignat Marie, Miao Brenda Y., Wibrand Camilla, Yang Monica M., Rychkov Dmitry, Flynn Emily, Nititham Joanne, Tamaki Whitney, Khan Umair, Carvidi Alexander, Krueger Melissa, Niemi Erene C., Sun Yang, Fragiadakis Gabriela K., Sellam Jérémie, Mariotti-Ferrandiz Encarnita, Klatzmann David, Gross Andr... See more
Journal:
JCI Insight
July 2024
Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19
Authors: Neyton Lucile P. A., Patel Ravi K., Sarma Aartik, Ansel K. Mark, Christenson Stephanie, Adkisson Michael, Eckalbar Walter, Maliskova Lenka, Schroeder Andrew, Bueno Raymund, Gordon Gracie, Hartoularos George, Kushnoor Divya, Lee David, McCarthy Elizabeth, Ogorodnikov Anton, Spitzer Matthew, Hiam Kami... See more
Journal:
Nature Communications
June 2024