Genomics CoLabs

Genomics CoLab

The Genomics CoLab specializes in the development and adoption of cutting-edge genomic approaches for collaborative and service-based research projects. These approaches include bulk- and single-cell RNA-seq, single cell multiomic approaches, small RNA-Seq, ChIP/ATAC-seq and whole exome/genome sequencing. We are also actively working on integrating novel genomic methods, such as combinatorial genomic methods, spatial transcriptomics, and new epigenomic approaches and on improving existing methods, such as increasing throughput and decreasing costs of bulk RNA-seq methods.

Recent Genomics Publications

Authors: Yadav Preeti, Gómez Ortega Javier, Dabral Prerna, Tamaki Whitney, Chien Charles, Chang Kai-Chun, Biswas Nivedita, Pan Sixuan, Nilsson Julia, Yin Xiaoyang, Bhattacharyya Aritra, Boostanpour Kaveh, Jujaray Tanay, Wang Jasper T., Tsukui Tatsuya, Molina Christopher J., Auyeung Vincent C., Sheppard Dean, Li Baosheng, Maishan Mazharul, Taenaka Hiroki, Matthay Michael A., Muramatsu Rieko, Maliskova Lenka, Ghosh Arnab, Eckalbar Walter L., Molofsky Ari B., Tamaki Stanley J., Bivona Trever G., Abate Adam R., Wagner Allon, Pillai Satish K., Wolters Paul J., Tharp Kevin M., Bhattacharya Mallar
August 2025
Authors: Hou Jintong, Haslund-Gourley Benjamin, Diray-Arce Joann, Hoch Annmarie, Rouphael Nadine, Becker Patrice M., Augustine Alison D., Ozonoff Al, Guan Leying, Kleinstein Steven H., Peters Bjoern, Reed Elaine, Altman Matt, Langelier Charles R., Maecker Holden, Kim Seunghee, Montgomery Ruth R., Krammer Florian, Wilson Michael, Eckalbar Walter, Bosinger Steven E., Levy Ofer, Steen Hanno, Rosen Lindsey B., Baden Lindsey R., Melamed Esther, Ehrlich Lauren I. R., McComsey Grace A., Sekaly Rafick P., Schaenman Joanna, Shaw Albert C., Hafler David A., Corry David B., Kheradmand Farrah, Atkinson Mark A., Brakenridge Scott C., Agudelo Higuita Nelson I., Metcalf Jordan P., Hough Catherine L., Messer William B., Pulendran Bali, Nadeau Kari C., Davis Mark M., Fernandez Sesma Ana, Simon Viviana, Kraft Monica, Bime Chris, Calfee Carolyn S., Erle David J., IMPACC Network , Robinson Lucy F., Cairns Charles B., Haddad Elias K., Comunale Mary Ann
July 2025
Authors: Pickering Harry, Alipanah-Lechner Narges, Chen Ernie, Duchen Dylan, Maecker Holden T., Kim-Schulze Seunghee, Montgomery Ruth R., Cotsapas Chris, Steen Hanno, Krammer Florian, Langelier Charles R., Levy Ofer, Baden Lindsey R., Melamed Esther, Ehrlich Lauren I.R., McComsey Grace A., Sekaly Rafick P., Cairns Charles B., Haddad Elias K., Shaw Albert C., Hafler David A., Corry David B., Kheradmand Farrah, Atkinson Mark A., Brakenridge Scott C., Higuita Nelson I. Agudelo, Metcalf Jordan P., Hough Catherine L., Messer William B., Pulendran Bali, Nadeau Kari C., Davis Mark M., Sesma Ana Fernandez, Simon Viviana, Kraft Monica, Bime Chris, Erle David J., Schaenmann Joanna, Ozonoff Al, Peters Bjoern, Kleinstein Steven H., Augustine Alison D., Diray-Arce Joann, Becker Patrice M., Rouphael Nadine, Altman Matthew C., Bosinger Steve, Eckalbar Walter, Calfee Carolyn S., Aguilar Oscar A., Reed Elaine F., Greenland John R., Calabrese Daniel R.
July 2025

Learn about CoProjects, Incubators, and Plug-in Labs

CoProjects are a series of shared projects designed to integrate our community through common pipelines and data curation. CoLabs CoProjects aim to build immune profiles for untapped streams of human diseases at UCSF.